History

Borne by an international shareholder structure, the company was founded on the 9th of April, 2010. It has been set up by Edgar Wingender, the creator of the TRANSFAC® database, and Alexander Kel, a renowned expert in bioinformatic algorithms.

The following is a list of all major achievements, public presentations and other events that have been important for the company's development, in descending order.

2013:

April 11

GeneXplain's CEO, Edgar Wingender, talked in the What Is Life seminar of the SciLifeLab, a collaborative center of Stockholm University, Karolinska Institute, the Royal Institute of Technology (KTH), and Uppsala University. The title of the lecture was "The regulatory code of the genome: mess or message?"

SciLifeLab

April 10

Edgar Wingender, CEO of geneXplain, delivered the COMPAS-lecture at Karolinska Institute, Stockholm, on the "Construction and analysis of gene regulatory networks".

Karolinska

March 25-26

GeneXplain contributed to the first CASyM Stakeholder Conference on the implementation of Systems Medicine in Europe, held in Lyon, France.

CASyM

March 20

Alexander Kel, CSO of geneXplain, presented at an Open Session of the SYSCOL project in Oxford, UK.

SysCol

March 20

Edgar Wingender, CEO of geneXplain, lectures at the VIIth International Congress on "Biotechnology: State of the Art and Prospects of Development" in Moscow about "Construction of gene regulatory networks of cardiomyocyte differentiation".

SysmedIBD

March 13-15

Alexander Kel, CSO of geneXplain, organizes a track on Gene Regulation at the ISCB Africa ASBCB Conference on Bioinformatics 2013 in Casablanca, Morocco.

ASBCB

March 06

Edgar Wingender, CEO of geneXplain, talks in the colloquium of the Helmholtz Centre for Infection Research (HZI).

SysmedIBD

February 21

Kick-off meeting to the EU project SysmedIBD in Manchester, UK.

SysmedIBD

February 01

Release 2.3 of the geneXplain platform!

geneXplain platform

January 23

Kick-off meeting to the EU project RESOLVE in Lille, France.

RESOLVE

2012:

December 02

A new comprehensive classification of human transcription factors has been published and incorporated into the geneXplain platform

TFClass

December 12-14

Edgar Wingender, CEO of geneXplain, presents at the GIW 2012 in Tainan, Taiwan, on the construction of tissue-specific transcriptional networks.

GIW2012

December 01

GeneXplain is partner of a new EU-funded project, SysmedIBD

FP7

November 29-30

Kick-off meeting of the EU-funded MIMOmics research consortium in Leiden, Netherlands.

MIMOmics

November 14

Alexander Kel, CSO of geneXplain, is giving a tutorial at the NETTAB Workshop on "Integrated Bio-Search" in Como, Italy.

NETTAB

October 30th

GeneXplain is partner of a new EU-funded project, MIMOmics

FP7

October 22-25th

Alexander Kel, in the framework of the Gulbenkian Training Programme in Bioinformatics, held a course on "Hunting for Promoters with NGS data"

PathProt5

October 18-19th

Alexander Kel, CSO of geneXplain, co-organized the PathProt5 forum in Oeiras, Portugal.

PathProt5

October 18th

GeneXplain co-authored an article which has been recommended by the "Faculty of 1000".

Access the recommendation on F1000

September 25th

Release 2.2 of the geneXplain platform issued!

geneXplain platform

August 21st

The 2012 releases of PASS and PharmaExpert issued!

PASSPharmaExpert

June 15th

New presentations about IMC and GenomeTraveler and a video about PASS
were published.

 

March

GeneXplain distributor of BIOBASE's TRANSFAC®, the database on transcription factors, their genomic binding sites and DNA-binding profiles, and TRANSPATH®, the database on signaling and metabolic pathways, both available under the geneXplain platform!

BIOBASE

March 30th

CSO Alexander Kel talked about "From motifs to pathways. How cracking the gene regulatory code can help to find drug targets?" at the workshop FROM GENE TO PHENOTYPE - INTERDISCIPLINARY RESEARCH IN MOLECULAR BIOLOGY AND BIOMEDICINE in Warsaw, Poland, March 28th-30th.

gene-to-phenotype

March 23rd

geneXplain became a member of the new European research consortium EpiMetab, funded by the German Federal Ministry of Education and Research.

BMBF logo

March 17th

CSO Alexander Kel is main organizer of the workshop "Pathway Analysis in Transcriptomics, Proteomics and Metabolomics" in Orlando, Florida. It is a satellite workshop of the ABRF 2012 "Learning from Biomolecules: The Technology Behind the Story".
See also here for further information.

ABRF12_logo

February 9th-10th

CSO Alexander Kel participates in the Proposers Workshop of the Skolkovo Institute of Science and Technology and the MIT in Cambridge, MA.

 

2011:

December 5th-6th

CSO Alexander Kel attended the 2nd SYSCOL meeting in Geneva.

Syscol_logo

November 8th-10th

GeneXplain platinum sponsor of the 2011 Joint Conference of CBI & JSBi in Kobe, Japan. Edgar Wingender presented the geneXplain portfolio in three talks:

"Efficient large-scale screening of chemical structures for potential biological activities"

"The geneXplain platform: from functional genome analysis to biological process simulation"

"One out of 24 million: How to computationally identify a new candidate drug against breast cancer"

Kobe

October 21st-22nd

Alexander Kel was co-organizer and instructor at the International Forum for Pathway Analysis in Proteomics (PathProt-4) organized by the Instituto Gulbenkian de Ciência, Oeiras, Portugal

IGC

October 10th

Edgar Wingender gave a presentation pointing "Towards a comprehensive computational platform for next generation drug development – A Russian‐German joint venture" at the German-Russian Forum Biotechnology 2011 in the Convention Center, Hannover, Germany. The workshop was held on the occasion of the Biotechnica exhibition.

The slideshow of this presentation is available. http://ht.ly/7wuZF

German-Russian network

September 23rd

Alexander Kel talked about "System medicine" at the St. Petersburg Scientific Forum "Science and Society. Physiology and Medicine of the 21st Century".

Combine2011

September 7th

Alexander Kel presented "BioUML - open source integrated platform for collaborative and reproducible research in systems biology" at the COMBINE 2011 in Heidelberg.

Combine2011

August 28th-September 1st

GeneXplain's booth at the 12th International Conference on Systems Biology in Mannheim/Heidelberg, Germany.

 

ICSB'2011

August 28th

Alexander Kel gave a presentation about "The SME's role in systems biology approaches to medical applications" at EU workshop on "Collaborative research in Systems Biology: Success stories and research funding opportunities" in Heidelberg.

   

EU flag

July 21st-24th

Alexander Kel, CSO of geneXplain, talked about "Modeling of pathway plasticity in cancer" at the Moscow Conference on Computational Molecular Biology (MCCMB'11) in the session of Medical Bioinformatics. He also presented the "geneXplain platform for systems medicine" in a special session on the BioUML/Skolkovo project.

GTPB

June 27th-30th

Alexander Kel, CSO of geneXplain, gave a course about "Hunting for Genes and Promoters" in the Gulbenkian Training Programme in Bioinformatics, Oeiras, Portugal.

GTPB

June 10th

Alexander Kel, CSO of geneXplain, participates in the FP7 Health Partnering Event of the European Union in Brussels.

FP7

June 9th

Alexander Kel, CSO of geneXplain, presented and discussed about the topic "SMEs in systems biology for medical applications" at Open Information Day on FP7 Health Research of the European Union in Brussels.

Get the slides here.

Open Day

March 23rd

Alexander Kel, CSO of geneXplain, talked about "From analysis of gene regulatory networks to systems medicine" at the VIth Moscow International Congress "Biotechnology: State of the Art and Prospects of Development" in Moscow, Russia.

March 1st

Alexander Kel gives a seminar about "Key-nodes in signal transduction network are potent drug targets for combating survival of tumor cells" at the Argonne National Laboratory, Computation Institute, of the University of Chicago.

Argonne Lab

February 21st

Alexander Kel, CSO of geneXplain, presented at the ABRF2011 in San Antonio, Texas.

In a workshop on the "Identification of Mechanism-Based Biomarkers and Drug Targets Using Pathway Analysis", Alexander has spoken about "GeneXplain — Identification of Causal Biomarkers and Drug Targets in Personalized Cancer Pathways"

February 1st

GeneXplain became partner of the BMBF-supported project GERONTOSHIELD (Systems biology-driven approach to unravel and revert the mechanisms responsible for poor immune responses in the elderly).

Euroflag

January 26th-28th

GeneXplain sponsors and presents at the Cell Signal-omics conference in Luxembourg.

NCCK

January 1st

GeneXplain became partner of the EU consortial project SYSCOL (Systems Biology of Colorectal Cancer).

Euroflag


2010:

November 7th-9th

GeneXplain exhibits at the 6th German Conference on Cheminformatics (GCC 2010) in Goslar, Germany.

 

October

GeneXplain starts distributing PASS and PharmaExpert.

PASS logo

September 20th-22nd

GeneXplain sponsors the 25th German Conference on Bioinformatics (GCB 2010) in Braunschweig, Germany.
Alexander Kel (CSO) gives a talk about the geneXplain technology.

GCB logo

July 15th

GeneXplain moves into its new office.

 

April 9th

GeneXplain is founded by an international partnership.

GCB logo